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Ion PGM

Ion Torrent Personal Genome Machine (PGM) is a sequencer that enables researchers to conduct reasonable investigations, ensuring short-term DNA sequencing. Apart from other synthesis-based technologies, Ion Torrent does not require chemically modified nucleotides, lasers and optical detectors, thus enabling the PGM system to attain unsurpassed coverage uniformity, practically independent of the GC-compound of the DNA sequenced. Essential shortage of the device is significant amount of false data at homopolymer sites and InDel spotting faults.

Application examples:

De novo small genomes sequencing, metagenomic sequencing, mutations identification, PRC-products sequencing.

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Selected publications:

  • Bragg et al. Shining a light on dark sequencing: characterising errors in Ion PGM data. PLoS Comput Biol. 2013 Apr;9(4):e1003031.
  • Milani et al. Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol. PLoS One. 2013 Jul 15;8(7):e68739.
  • Brown et al. Deep Ion Torrent sequencing identifies soil fungal community shifts after frequent prescribed fires in a southeastern US forest ecosystem. FEMS Microbiol Ecol. 2013 Dec;86(3):557-66.

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